BtaEX0016890 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004746 | HELZ
Description
helicase with zinc finger [Source:HGNC Symbol;Acc:HGNC:16878]
Coordinates
chr19:63856948-63860612:-
Coord C1 exon
chr19:63860561-63860612
Coord A exon
chr19:63859121-63859196
Coord C2 exon
chr19:63856948-63857146
Length
76 bp
Sequences
Splice sites
3' ss Seq
ATATCCTGATTACTCTCTAGGAT
3' ss Score
7.76
5' ss Seq
AAGGTAACG
5' ss Score
10.19
Exon sequences
Seq C1 exon
ACAGCAACTAGTAACGTCCTCTCTGGATATCATGTGGAAGACTTAGAGGAGG
Seq A exon
GATCTTGTAATGGTTGGCATTTCCGCCCACCACCTAGGGGAATCACAAGCAGCGAGGAATATACTTTGTGTAAAAG
Seq C2 exon
ATTTTTAGAGCAAGGAATCTGTAGGTATGGTGCGCAGTGTACTTCAGCACATTCCCAGGAAGAACTAGCAGAATGGCAGAAAAGATATGCTTCACGGTTGATAAAATTGAAACAGCAAAATGAGAATAAACAGCTCTCAGGCAGTTACATGGAAACCTTGATAGAAAAGTGGATGAATTCATTATCTCCTGAGAAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004746_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.077 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0064219=zf-CCCH=PU(25.9=26.9)
C2:
PF0064219=zf-CCCH=PD(70.4=28.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGTGGAAGACTTAGAGGAGG
R:
CCATGTAACTGCCTGAGAGCTG
Band lengths:
175-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development