GgaEX1000500 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr8:2654745-2657713:-
Coord C1 exon
chr8:2657534-2657713
Coord A exon
chr8:2655986-2656162
Coord C2 exon
chr8:2654745-2654927
Length
177 bp
Sequences
Splice sites
3' ss Seq
ATTCTGTCTTTCTCTTTCAGAAA
3' ss Score
12.49
5' ss Seq
TCCGTGAGT
5' ss Score
8.93
Exon sequences
Seq C1 exon
AAAGATGTGATGTCGGGCCTCTGGAAAATGGTTATATCCAAAATAATTGGAAAAGATATTTTAAAGAAGGTGAAAGAACTAAATATTTCTGCAATAAAAACTATCGTACTGAAAATGAAGATGGTGAAATTACGTGTTCAAAGAATGGCTGGTCACCTACTCCAAGATGTATCCGTAAAG
Seq A exon
AAACCTGCCAGTGGGTTGATCTGACGAATGGCTATTTCATGGAGAGAAGGGCAACATTTGATATAGGAGAAACAGTCAGCTATAGCTGTTATAATGACTTTGTAACTCCAGAAAAACAAAAAATGGGAATGATACAATGTCAAAAGAATGGCTGGTCTCCACCTCCAAAGTGCATCC
Seq C2 exon
AAACCTGTAAAACATCACACATTCACACTTTGGTTGACTGTGGACCAAGGGAAAATATATATCTGCCTGGAGATATACTTGAGTATAGTTGTCCTGAGAAATATAAAACTGTGGATAACATGCCATATAGTACTACCAGGTGTGATGTAAATGGTGAATGGAAGCCAACGCCCCACTGTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002431-'12-14,'12-13,13-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=90.2)
A:
PF0008415=Sushi=WD(100=91.7)
C2:
PF0008415=Sushi=WD(100=91.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTCGGGCCTCTGGAAAATG
R:
ACTCAAGTATATCTCCAGGCAGA
Band lengths:
255-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]