GgaEX1007209 @ galGal3
Exon Skipping
Gene
ENSGALG00000009005 | E1BUE7_CHICK
Description
NA
Coordinates
chr8:19802403-19819229:-
Coord C1 exon
chr8:19819153-19819229
Coord A exon
chr8:19803355-19803397
Coord C2 exon
chr8:19802403-19802447
Length
43 bp
Sequences
Splice sites
3' ss Seq
GTTAATTGCTTAATTAACAGGAG
3' ss Score
4.25
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GGACAAATGAACTTGATTGCAGTCTGATTATGGATTCTGGAGATACTGCTTATACAGAATTCGACTTTGAAGACCAG
Seq A exon
GAGGAGGATCAGTCAAGTTTTTCTGGTTATGAAAGCACGGGAG
Seq C2 exon
ATTTTTCAGAAGACTTGAAGAAATCAAACATCTTTTTCATAGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009005-'10-10,'10-9,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.115 A=0.467 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0040617=ADK=PU(1.3=12.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACAAATGAACTTGATTGCAGTCT
R:
ATGTTTGATTTCTTCAAGTCTTCTGA
Band lengths:
108-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]