BtaEX6016995 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017411 | AK5
Description
Bos taurus adenylate kinase 5 (AK5), mRNA. [Source:RefSeq mRNA;Acc:NM_001083757]
Coordinates
chr3:67422723-67476744:-
Coord C1 exon
chr3:67476668-67476744
Coord A exon
chr3:67425088-67425130
Coord C2 exon
chr3:67422723-67422767
Length
43 bp
Sequences
Splice sites
3' ss Seq
TTGATTTTTTTAATAAACAGGGT
3' ss Score
7.26
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GTTCAAGTGACCTTGATCCTTCGATGATGTTGGACACTGGAGAGGTCATTGATACGGGATCTGATTATGAAGATCAG
Seq A exon
GGTGATGACCAGTTAAATGTGTTTGGAGAAGACACCATGGGAG
Seq C2 exon
GTTTCATGGAAGACTTGAAAAAGTGTAAAATTATTTTCATGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017411-'8-12,'8-11,9-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.577 A=0.400 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0040617=ADK=PU(1.3=12.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGACCTTGATCCTTCGATGA
R:
TTACACTTTTTCAAGTCTTCCATGA
Band lengths:
100-143
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]