HsaEX6031689 @ hg38
Exon Skipping
Gene
ENSG00000154027 | AK5
Description
adenylate kinase 5 [Source:HGNC Symbol;Acc:HGNC:365]
Coordinates
chr1:77482943-77486352:+
Coord C1 exon
chr1:77482943-77483043
Coord A exon
chr1:77483317-77483359
Coord C2 exon
chr1:77486308-77486352
Length
43 bp
Sequences
Splice sites
3' ss Seq
TATTGTGATTTTTTTAACAGGGT
3' ss Score
8.73
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
TTTGTCTTCTTGAAGTCAGCCTTCCTGTCCACAGATAGTTTTTGCACTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAG
Seq A exon
GGTGATGACCAGTTAAATGTATTTGGAGAGGACACTATGGGAG
Seq C2 exon
GTTTCATGGAAGATTTGAGAAAGTGTAAAATTATTTTCATAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154027-'25-29,'25-28,26-29
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.533 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0040617=ADK=PU(1.3=12.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTTCTTGAAGTCAGCCTT
R:
ACACTTTCTCAAATCTTCCATGAAAC
Band lengths:
125-168
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains