MmuEX6074787 @ mm9
Exon Skipping
Gene
ENSMUSG00000039058 | Ak5
Description
adenylate kinase 5 [Source:MGI Symbol;Acc:MGI:2677491]
Coordinates
chr3:152162275-152189758:-
Coord C1 exon
chr3:152189682-152189758
Coord A exon
chr3:152166813-152166855
Coord C2 exon
chr3:152162275-152162319
Length
43 bp
Sequences
Splice sites
3' ss Seq
TTTGATTGTTTTTAAAACAGGAC
3' ss Score
7.05
5' ss Seq
GAGGTACGT
5' ss Score
10.2
Exon sequences
Seq C1 exon
ATTCAAGTGACCTTGACCCTTCCATGATGTTTGATGCTGGAGAGATTATTGACACAGGATCAGATTACGATAACCAG
Seq A exon
GACGATGATCAGCTAAATGTATTTGGAGAAGACACAGAGGGAG
Seq C2 exon
GCTTCATGGAGGATTTGAGGAAGTGTAAAATTATTTTCTTGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039058-'7-9,'7-8,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.423 A=0.533 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0040617=ADK=PU(1.3=12.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGACCTTGACCCTTCCATGA
R:
TTACACTTCCTCAAATCCTCCATGA
Band lengths:
100-143
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: