HsaEX6031689 @ hg19
Exon Skipping
Gene
ENSG00000154027 | AK5
Description
adenylate kinase 5 [Source:HGNC Symbol;Acc:365]
Coordinates
chr1:77883324-77952037:+
Coord C1 exon
chr1:77883324-77883400
Coord A exon
chr1:77949002-77949044
Coord C2 exon
chr1:77951993-77952037
Length
43 bp
Sequences
Splice sites
3' ss Seq
TATTGTGATTTTTTTAACAGGGT
3' ss Score
8.73
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GTTCAAGTGACCTTGATCCTTCGATGATATTGGACACTGGAGAGATCATTGATACAGGATCTGATTATGAAGATCAG
Seq A exon
GGTGATGACCAGTTAAATGTATTTGGAGAGGACACTATGGGAG
Seq C2 exon
GTTTCATGGAAGATTTGAGAAAGTGTAAAATTATTTTCATAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154027-'14-18,'14-17,18-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.231 A=0.400 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0040617=ADK=PU(1.3=12.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGACCTTGATCCTTCGATGA
R:
TTACACTTTCTCAAATCTTCCATGAA
Band lengths:
100-143
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)