MmuEX6074787 @ mm10
Exon Skipping
Gene
ENSMUSG00000039058 | Ak5
Description
adenylate kinase 5 [Source:MGI Symbol;Acc:MGI:2677491]
Coordinates
chr3:152499311-152526794:-
Coord C1 exon
chr3:152526718-152526794
Coord A exon
chr3:152503849-152503891
Coord C2 exon
chr3:152499311-152499355
Length
43 bp
Sequences
Splice sites
3' ss Seq
TTTGATTGTTTTTAAAACAGGAC
3' ss Score
7.05
5' ss Seq
GAGGTACGT
5' ss Score
10.2
Exon sequences
Seq C1 exon
ATTCAAGTGACCTTGACCCTTCCATGATGTTTGATGCTGGAGAGATTATTGACACAGGATCAGATTACGATAACCAG
Seq A exon
GACGATGATCAGCTAAATGTATTTGGAGAAGACACAGAGGGAG
Seq C2 exon
GCTTCATGGAGGATTTGAGGAAGTGTAAAATTATTTTCTTGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039058-'9-24,'9-23,10-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.411 A=0.500 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0040617=ADK=PU(1.3=12.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGACCTTGACCCTTCCATGA
R:
TTACACTTCCTCAAATCCTCCATGA
Band lengths:
100-143
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types