RnoEX0008245 @ rn6
Exon Skipping
Gene
ENSRNOG00000046947 | Ak5
Description
adenylate kinase 5 [Source:RGD Symbol;Acc:1590818]
Coordinates
chr2:257693830-257739359:-
Coord C1 exon
chr2:257739283-257739359
Coord A exon
chr2:257717856-257717898
Coord C2 exon
chr2:257693830-257693993
Length
43 bp
Sequences
Splice sites
3' ss Seq
TTTAATTGTTTTTAAAACAGGAT
3' ss Score
7.35
5' ss Seq
GAGGTACGT
5' ss Score
10.2
Exon sequences
Seq C1 exon
ATTCAAGTGACCTTGACCCTTCCATGATGTTTGATGCTGGAGAGATTGTTGACACAGGATCGGATTATGACAACCAG
Seq A exon
GATGATGATCAGCTAAATGTATTTGGAGAAGACACCATGGGAG
Seq C2 exon
GTGGCCCTGGCTCTGGCAAAGGCACCCAGTGTGAGAAGCTGGCAGAAAAATATGGGTTCACCCATCTCTCTACTGGTGAGCTGCTGCGCCAGGAGCTGACCTCGGAGTCCGAAAGAAGCAAACTGATCCGTGACATCATGGAGCGTGGAGATCTGGTGCCCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046947_MULTIEX1-3/4=2-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.692 A=0.333 C2=0.109
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0040617=ADK=FE(34.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTTCCATGATGTTTGATGCT
R:
AGCAGCTCACCAGTAGAGAGA
Band lengths:
147-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]