GgaEX1007209 @ galGal4
Exon Skipping
Gene
ENSGALG00000009005 | AK5
Description
adenylate kinase 5 [Source:HGNC Symbol;Acc:HGNC:365]
Coordinates
chr8:17993003-18017787:-
Coord C1 exon
chr8:18017711-18017787
Coord A exon
chr8:18002335-18002377
Coord C2 exon
chr8:17993003-17993119
Length
43 bp
Sequences
Splice sites
3' ss Seq
GTTAATTGCTTAATTAACAGGAG
3' ss Score
4.25
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GGACAAATGAACTTGATTGCAGTCTGATTATGGATTCTGGAGATACTGCTTATACAGAATTCGACTTTGAAGACCAG
Seq A exon
GAGGAGGATCAGTCAAGTTTTTCTGGTTATGAAAGCACGGGAG
Seq C2 exon
GGTATTGTCCTAGAGCTACTGAAAGAAGCCATGATCACAAATTTAGGAGACACAAAAGGATTTCTGATTGATGGTTATCCGTGTGAGCTGAAAGAAGCAGAAGAGTTTGAGAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009005_MULTIEX1-1/5=C1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.115 A=0.467 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0040617=ADK=FE(24.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTCTGATTATGGATTCTGGAGA
R:
AGCTCACACGGATAACCATCA
Band lengths:
148-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]