GgaEX1016283 @ galGal3
Exon Skipping
Gene
ENSGALG00000005180 | COL11A1
Description
NA
Coordinates
chr8:11988873-11991529:+
Coord C1 exon
chr8:11988873-11988980
Coord A exon
chr8:11990307-11990414
Coord C2 exon
chr8:11991476-11991529
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTCCTTTTCCTGAAAACCAGGGT
3' ss Score
4.98
5' ss Seq
AAGGTGAAT
5' ss Score
6.38
Exon sequences
Seq C1 exon
GGCTCACCAGGGGAACGTGGAGCAGCAGGCACTGCTGGTCCAATTGGTCTACCAGGTCGTCCTGGACCTCAGGGTCCTCCAGGCCCTGCAGGGGAGAAGGGTGCTCCT
Seq A exon
GGTGAAAAAGGTCCTCAAGGTCCAGCTGGACGTGATGGAGTACAAGGTCCTGTAGGACTTCCTGGTCCTGCTGGTCCAAGTGGTTCTCCTGGAGAAGATGGTGACAAG
Seq C2 exon
GGTGAAATTGGTGAACCGGGTCAAAAAGGTAGTAAAGGTGACAAGGGAGAAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005180-'45-46,'45-45,46-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(29.0=55.6),PF0139113=Collagen=PU(42.0=80.6)
A:
PF0139113=Collagen=FE(50.7=100),PF0139113=Collagen=PU(41.0=88.9)
C2:
PF0139113=Collagen=PD(2.9=11.1),PF0139113=Collagen=FE(21.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCACCAGGGGAACGT
R:
GTTTTCTCCCTTGTCACCTTTACT
Band lengths:
162-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]