DreEX0022795 @ danRer10
Exon Skipping
Gene
ENSDARG00000026165 | col11a1a
Description
collagen, type XI, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-070209-167]
Coordinates
chr24:28697677-28727997:-
Coord C1 exon
chr24:28727890-28727997
Coord A exon
chr24:28727637-28727744
Coord C2 exon
chr24:28697677-28697730
Length
108 bp
Sequences
Splice sites
3' ss Seq
ATAATGTTGTCCTTTATCAGGGA
3' ss Score
8.11
5' ss Seq
AAGGTTAAA
5' ss Score
2.7
Exon sequences
Seq C1 exon
GGTTCCCCTGGTGAGAGAGGAGCAGCAGGATCTGCTGGTCCCATTGGCCTGCCTGGACGTACTGGACCTCAGGGACCCCCAGGACCTGCTGGAGAGAAGGGTGCACCG
Seq A exon
GGAGAGAGAGGTCCTCTGGGTCCAGCCGGTAGGGATGGAGTTCAAGGTCCAGTTGGTCTGCCAGGTCCAGCAGGACCTCAGGGTCCACCTGGAGAAGATGGTGACAAG
Seq C2 exon
GGTCCTGCTGGTCAAAAAGGAGACACTGGCACGGTTGGACCTCCTGGGCCTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026165_MULTIEX1-27/42=26-42
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(15.1=38.9)
A:
PF0139113=Collagen=PU(41.0=88.9)
C2:
PF0139113=Collagen=FE(28.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTCCCCTGGTGAGAGAGG
R:
AGGAGGCCCAGGAGGTCC
Band lengths:
162-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]