DreEX0022806 @ danRer10
Exon Skipping
Gene
ENSDARG00000026165 | col11a1a
Description
collagen, type XI, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-070209-167]
Coordinates
chr24:28697677-28714600:-
Coord C1 exon
chr24:28714547-28714600
Coord A exon
chr24:28708699-28708752
Coord C2 exon
chr24:28697677-28697730
Length
54 bp
Sequences
Splice sites
3' ss Seq
GTCCTTTTCTCTGTCCGCAGGGA
3' ss Score
12.96
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GGACCCCCTGGTCCTTCTGGAGAAGCTGGTCCACCAGGACCTCCTGGAAAACGA
Seq A exon
GGACCCCCGGGGGCGCATGGAGCTGAAGGCAGACAAGGAGAGAAGGGCGCCAAG
Seq C2 exon
GGTCCTGCTGGTCAAAAAGGAGACACTGGCACGGTTGGACCTCCTGGGCCTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026165_MULTIEX1-39/42=38-42
Average complexity
C3
Mappability confidence:
96%=95=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(1.5=5.6)
A:
PF0139113=Collagen=PU(2.4=11.1)
C2:
PF0139113=Collagen=FE(28.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCTGGTCCTTCTGGAGAA
R:
GAGGCCCAGGAGGTCCAAC
Band lengths:
102-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]