BtaEX6047783 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047998 | COL5A1
Description
collagen, type V, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2209]
Coordinates
chr11:106876601-106878191:-
Coord C1 exon
chr11:106878138-106878191
Coord A exon
chr11:106877520-106877573
Coord C2 exon
chr11:106876601-106876708
Length
54 bp
Sequences
Splice sites
3' ss Seq
TGCCCTCTTGCTCCCTCCAGGGT
3' ss Score
11.25
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
GGATCACCAGGCCCTACGGGTGAGCCAGGCCCATCTGGGCCTCCAGGAAAAAGG
Seq A exon
GGTCCGCCCGGCCCCGCAGGTCCCGAAGGCAGGCAGGGGGAGAAAGGAGCCAAG
Seq C2 exon
GGAGAAGCCGGCTTGGAAGGCCCTCCTGGGAAGACTGGCCCCATTGGCCCCCAGGGGGCCCCCGGGAAGCCGGGGCCCGACGGCCTTCGAGGGATCCCGGGCCCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047998-'63-67,'63-66,64-67=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(27.0=100),PF0139113=Collagen=FE(22.1=100)
A:
PF0139113=Collagen=PD(0.1=0.0),PF0139113=Collagen=FE(22.1=100)
C2:
PF0139113=Collagen=PD(44.2=94.4),PF0139113=Collagen=PU(33.8=63.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAGCCAGGCCCATCT
R:
GGATCCCTCGAAGGCCGTC
Band lengths:
133-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]