MmuEX6099914 @ mm10
Exon Skipping
Gene
ENSMUSG00000026837 | Col5a1
Description
collagen, type V, alpha 1 [Source:MGI Symbol;Acc:MGI:88457]
Coordinates
chr2:28015854-28017202:+
Coord C1 exon
chr2:28015854-28015907
Coord A exon
chr2:28016439-28016492
Coord C2 exon
chr2:28016595-28017202
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTGTTCTATTGTTTTTCTAGGGT
3' ss Score
10.16
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GGGTCCCCGGGCCCTACTGGTGAACCTGGTCCATCTGGGCCTCCAGGAAAGAGG
Seq A exon
GGTCCCCCAGGCCCTGCAGGCCCTGAAGGCAGGCAGGGGGAGAAAGGAGCCAAG
Seq C2 exon
GGAGATGGGAAGGGTCAGGGAGCCTTAAGGGAGGATGAAGTAGCCGGAGGAAGTAGACAGAAAGAGGTCAGGCTGAGATCACGCCCAGTCTTTGACCTATGACAGAAGGGAAGACAACACACACAGGAAGTGAGGCCTTGGGAGACTGGGCTAGCCACCACCTAAGTGTTTCACATGGTGCCCAGCACTGGGCGCTCCGCCACTCTCTCAGTGAGGTGACCCACATGGCCAACATGGGAACATTTGCCAGTTTTCTTTGAGACTTAGTGAGCTCTGCATCTGGGTGCTGTGTGGCCTGACACCGGGTAGGTGACCTTCTGTGGTCAGCAGGATCAGGGAGCCACTATGTTTGGATAACAGAATGGAGCTTGGGCCAAGTCAGCCTCCACAGGAAGGTGGGGTGTGGCACCACTCAGGACGCGTGGGAGCACCTCCACAACACCCCAGGGGTTTGGGGCTGGGCCCTTTGAGCCTCTGAACATATACGTCCTCCTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026837-'75-73,'75-72,76-73
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0139113=Collagen=PU(6.1=27.8)
C2:
PF0139113=Collagen=FE(42.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACTGGTGAACCTGGTCCA
R:
TAGGTCAAAGACTGGGCGTGA
Band lengths:
141-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types