GgaEX1016825 @ galGal4
Exon Skipping
Gene
ENSGALG00000002546 | COL5A1
Description
collagen alpha-1(V) chain precursor [Source:RefSeq peptide;Acc:NP_990121]
Coordinates
chr17:7548511-7549872:+
Coord C1 exon
chr17:7548511-7548564
Coord A exon
chr17:7548986-7549039
Coord C2 exon
chr17:7549765-7549872
Length
54 bp
Sequences
Splice sites
3' ss Seq
CTATTTTGTGCCTTTTCCAGGGC
3' ss Score
10.89
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GGGTCCCCAGGTCCCACGGGAGAGCCAGGCCCCTCTGGACCCCCAGGAAAAAGG
Seq A exon
GGCCCTCCTGGTCCAGCTGGTCCTGAAGGAAGGCAAGGAGAGAAAGGAGCCAAG
Seq C2 exon
GGTGAAGCTGGTTTGGAAGGGCCTCCTGGGAAGACAGGCCCAATCGGTCCCCAGGGTGCTCCGGGGAAGCCCGGCCCTGATGGCCTCCGGGGAATTCCTGGTCCAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002546-'67-62,'67-61,68-62
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0139113=Collagen=PU(7.5=27.8)
C2:
PF0139113=Collagen=FE(52.2=100),PF0139113=Collagen=PU(21.9=63.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGCCAGGCCCCTCTG
R:
AACTGGACCAGGAATTCCCCG
Band lengths:
143-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]