RnoEX0023387 @ rn6
Exon Skipping
Gene
ENSRNOG00000008749 | Col5a1
Description
collagen type V alpha 1 chain [Source:RGD Symbol;Acc:70920]
Coordinates
chr3:6559646-6561031:+
Coord C1 exon
chr3:6559646-6559699
Coord A exon
chr3:6560296-6560349
Coord C2 exon
chr3:6560924-6561031
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTGTTCTATTGTTTTTCTAGGGT
3' ss Score
10.16
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GGATCCCCAGGCCCTACTGGTGAACCTGGTCCATCTGGGCCTCCAGGAAAGAGG
Seq A exon
GGTCCACCGGGCCCTGCAGGCCCTGAAGGCAGGCAGGGGGAGAAAGGAGCCAAG
Seq C2 exon
GGAGAAGCTGGCTTAGAAGGCCCTCCTGGGAAGACTGGCCCCATTGGTCCCCAAGGGGCCCCTGGGAAGCCTGGCCCTGATGGTCTTCGTGGGATCCCTGGTCCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008749-'81-64,'81-63,82-64
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(17.9=100)
A:
PF0139113=Collagen=PU(6.0=27.8)
C2:
PF0139113=Collagen=PD(20.0=52.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACTGGTGAACCTGGTCCA
R:
AGGGATCCCACGAAGACCATC
Band lengths:
141-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]