GgaEX1016825 @ galGal3
Exon Skipping
Gene
ENSGALG00000002546 | Q90689_CHICK
Description
NA
Coordinates
chr17:8230210-8231571:+
Coord C1 exon
chr17:8230210-8230263
Coord A exon
chr17:8230685-8230738
Coord C2 exon
chr17:8231464-8231571
Length
54 bp
Sequences
Splice sites
3' ss Seq
CTATTTTGTGCCTTTTCCAGGGC
3' ss Score
10.89
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GGGTCCCCAGGTCCCACGGGAGAGCCAGGCCCCTCTGGACCCCCAGGAAAAAGG
Seq A exon
GGCCCTCCTGGTCCAGCTGGTCCTGAAGGAAGGCAAGGAGAGAAAGGAGCCAAG
Seq C2 exon
GGTGAAGCTGGTTTGGAAGGGCCTCCTGGGAAGACAGGCCCAATCGGTCCCCAGGGTGCTCCGGGGAAGCCCGGCCCTGATGGCCTCCGGGGAATTCCTGGTCCAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002546-'61-64,'61-63,62-64=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(21.5=100),PF0139113=Collagen=PU(13.8=44.4)
A:
PF0139113=Collagen=PD(19.0=83.3),PF0139113=Collagen=FE(29.3=100)
C2:
PF0139113=Collagen=PD(17.5=47.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGCCAGGCCCCTCTG
R:
AACTGGACCAGGAATTCCCCG
Band lengths:
143-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]