DreEX0022808 @ danRer10
Exon Skipping
Gene
ENSDARG00000026165 | col11a1a
Description
collagen, type XI, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-070209-167]
Coordinates
chr24:28697677-28708752:-
Coord C1 exon
chr24:28708699-28708752
Coord A exon
chr24:28706807-28706914
Coord C2 exon
chr24:28697677-28697730
Length
108 bp
Sequences
Splice sites
3' ss Seq
TCTTTTCTCTTTATCTTTAGGGA
3' ss Score
11.88
5' ss Seq
GTCGTGAGT
5' ss Score
7.82
Exon sequences
Seq C1 exon
GGACCCCCGGGGGCGCATGGAGCTGAAGGCAGACAAGGAGAGAAGGGCGCCAAG
Seq A exon
GGAGAAGCAGGACTTGAGGGTCCACCAGGTAAAACTGGACCAGTTGGTCCTCAAGGACCCTCTGGAAAGCCTGGTCCTGAAGGTCTCAGAGGAATCCCCGGTCCAGTC
Seq C2 exon
GGTCCTGCTGGTCAAAAAGGAGACACTGGCACGGTTGGACCTCCTGGGCCTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026165_MULTIEX1-40/42=39-42
Average complexity
C3
Mappability confidence:
96%=98=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PU(2.4=11.1)
A:
PF0139113=Collagen=FE(42.7=100)
C2:
PF0139113=Collagen=FE(28.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCGCATGGAGCTGAAG
R:
AGGAGGCCCAGGAGGTCC
Band lengths:
98-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]