GgaEX1016328 @ galGal3
Exon Skipping
Gene
ENSGALG00000015908 | COL12A1
Description
NA
Coordinates
chr3:83582835-83586238:+
Coord C1 exon
chr3:83582835-83582988
Coord A exon
chr3:83585232-83585424
Coord C2 exon
chr3:83586117-83586238
Length
193 bp
Sequences
Splice sites
3' ss Seq
CTTTTCTTCCATCCTTACAGCCT
3' ss Score
10.68
5' ss Seq
TAGGTATGG
5' ss Score
7.37
Exon sequences
Seq C1 exon
CGCAGTGGAGGAAGGCAGATGTTTGGAAAAGTAAATGCTTCTGCCACAAGCATAGTGTTGAAGAGACTTAAGCCTCGAACTACATATGACCTCAGTGTTGTTCCAATTTATGATTTTGGACAAGGAAAATCAAGAAAAGCAGAAGGAACAACAG
Seq A exon
CCTCTCCCTTTAAGCCGCCTAGAAATTTGAGAACTTCTGATTCAACTATGTCCAGTTTCCGAGTAACCTGGGAGCCGGCCCCTGGGCGAGTGAAGGGGTACAAAGTTACTTTCCACCCTACTGAAGATGACAGGAATCTTGGAGAATTAATTGTGGGACCCTATGACAGCACTGTGGTTTTGGAGGAACTTAG
Seq C2 exon
GGCAGGAACTACCTATAAGGTAAATGTTTTTGGAATGTTTGATGGAGGAGAAAGCAACCCCCTGGTTGGACAAGAGATGACCACTCTTTCAGACACTACCACGGAGCCATTTTTATCTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015908-'22-23,'22-22,23-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.221 A=0.385 C2=0.286
Domain overlap (PFAM):
C1:
NO
A:
PF0004116=fn3=PU(74.1=92.3)
C2:
PF0004116=fn3=PD(24.7=47.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGAAGGCAGATGTTTGG
R:
GGCTCCGTGGTAGTGTCTGAA
Band lengths:
257-450
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]