MmuEX6067463 @ mm9
Exon Skipping
Gene
ENSMUSG00000032332 | Col12a1
Description
collagen, type XII, alpha 1 [Source:MGI Symbol;Acc:MGI:88448]
Coordinates
chr9:79528100-79530095:-
Coord C1 exon
chr9:79529829-79530095
Coord A exon
chr9:79529196-79529388
Coord C2 exon
chr9:79528100-79528221
Length
193 bp
Sequences
Splice sites
3' ss Seq
AAAATCTTTTATTTTTACAGCGT
3' ss Score
8.27
5' ss Seq
TAGGTAGGA
5' ss Score
7
Exon sequences
Seq C1 exon
TATCTCAAGATTCCAAAATCTTAAGAGTGGATGAAGAAACAGAACACACGATGAGAGTTACCTGGAAAGCAGCACCGGGGAAAGTCGTCAACTACCGTGTTGTGTATCGCCCTCAAGGGGGTGGGAGGCAGATGGTTGCTAAGGTGCCACCCACGGTCACTTCAACAGTGCTAAAGAGACTTCAACCCCAGACCACATATGACATCACAGTTCTCCCAATGTACAAGACAGGAGAAGGAAAGCTCAGGCAAGGCTCAGGAACAACAG
Seq A exon
CGTCTCGATTTAAATCGCCGAGAAACCTCAAAACTTCTGACCCAACCATGTCAAGTTTCAGAGTGACTTGGGAGCCTGCCCCTGGGGAAGTGAAAGGTTACAAAGTCACATTCCACCCTACAGGCGATGACAGAAGACTTGGGGAGTTGGTCCTTGGACCATATGACAACACAGTTGTCTTGGAGGAGCTTAG
Seq C2 exon
GGCAGGCACCACCTATAGAGTCAATGTTTTTGGGATGTTTGATGGAGGAGAAAGTTTACCACTCGTTGGGCAAGAAATGACAACTCTTTCTGACACAACTGTGACACCATTTCTATCTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032332-'18-16,'18-15,19-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.511 A=0.385 C2=0.071
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=87.8)
A:
PF0004116=fn3=PU(74.1=92.3)
C2:
PF0004116=fn3=PD(24.7=47.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGTTGTGTATCGCCCTCAA
R:
TGTCATTTCTTGCCCAACGAGT
Band lengths:
254-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: