RnoEX0022798 @ rn6
Exon Skipping
Gene
ENSRNOG00000058470 | Col12a1
Description
collagen type XII alpha 1 chain [Source:RGD Symbol;Acc:2374]
Coordinates
chr8:87117721-87119780:-
Coord C1 exon
chr8:87119514-87119780
Coord A exon
chr8:87118770-87118839
Coord C2 exon
chr8:87117721-87117842
Length
70 bp
Sequences
Splice sites
3' ss Seq
AGTCACCTTTCACCCTACAGGTG
3' ss Score
9.62
5' ss Seq
TAGGTAGGA
5' ss Score
7
Exon sequences
Seq C1 exon
TATCTCAAGACTCCAAAATCTTAAAAGTGGATGAAGAAACAGAACACACAATGAGAGTTACCTGGAAAGCAGCGCCGGGGAAAGTCATCAACTACCGCGTTGTGTATCGCCCTCAAGGGGGTGGGAGACAGATGGTTGCTAAGGTTCCACCCACGGTCACTTCAACAGTGCTAAAGAGGCTTCAACCCCAGACCACATATGACATCACAGTTCTCCCAATGTATAAGACAGGAGAAGGAAAGCTTAGACAAGGATCAGGAACAACAG
Seq A exon
GTGACGACAGAAGACTTGGGGAGTTGGTCCTTGGACCATATGACAACACAGTTGTCTTGGAGGAGCTTAG
Seq C2 exon
GGCAGGCACTACATATAGAGTCAATGTTTTTGGGATGTTCGATGGAGGAGAAAGTTTACCACTTGTTGGGCAGGAAATGACAACCCTTTCTGACACAACTGTGACACCATTTCTATCTTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058470-'28-32,'28-31,29-32
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.478 A=0.385 C2=0.071
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=87.8)
A:
PF0004116=fn3=PU(74.1=92.3)
C2:
PF0004116=fn3=PD(24.7=47.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGAGGCTTCAACCCCAGAC
R:
GGGTTGTCATTTCCTGCCCAA
Band lengths:
181-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]