GgaEX1016331 @ galGal3
Exon Skipping
Gene
ENSGALG00000015908 | COL12A1
Description
NA
Coordinates
chr3:83558958-83562029:+
Coord C1 exon
chr3:83558958-83559074
Coord A exon
chr3:83560278-83560421
Coord C2 exon
chr3:83561973-83562029
Length
144 bp
Sequences
Splice sites
3' ss Seq
GTTTTATATATTTATTACAGATG
3' ss Score
7.96
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
TTAATCCACCGTCAGACTTGAATTTTACAATTATAGATGAACATAATGTTCAAATGTCATGGAAAAGGCCACCAGATGCAATAGTGGGTTACAGGATAACTGTGGTTCCTACAAATG
Seq A exon
ATGGACCGACTAAAGAATTTACTCTTTCACCTAGCACAACCCAAACTGTCTTATCAGATCTTATACCTGAAATAGAGTATGTTGTATCAATAGCTTCATATGATGAGGTAGAGGAGAGTCTACCTGTTTTTGGCCAACTAACAA
Seq C2 exon
TTCAGACAGGTGGTCCAGGCATACCAGAAGAAAAGAAGGTTGAAGCTCAAATACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015908-'5-5,'5-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.122 C2=0.150
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(47.5=95.0)
A:
PF0004116=fn3=PD(51.2=83.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACCGTCAGACTTGAATTT
R:
TTTGTATTTGAGCTTCAACCTTCT
Band lengths:
170-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]