MmuEX6067452 @ mm10
Exon Skipping
Gene
ENSMUSG00000032332 | Col12a1
Description
collagen, type XII, alpha 1 [Source:MGI Symbol;Acc:MGI:88448]
Coordinates
chr9:79705562-79707932:-
Coord C1 exon
chr9:79707816-79707932
Coord A exon
chr9:79706228-79706371
Coord C2 exon
chr9:79705562-79705621
Length
144 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTTTGTGTTTTCAGATG
3' ss Score
12.25
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
TTGACCCACCTTCCGACTTGAATTTTAAAATTATAGATGAAAATACTGTTCATATGTCATGGGAGAGACCAGTTGATCCAATTGTGGGTTACAGAATAACAGTGGACCCTACAACAG
Seq A exon
ATGGGCCTACTAAAGAATTTACCCTTGCAGCTAGTACCACTGAAACTCTATTATCAGATCTTATTCCTGAAACACAGTATGTGGTGACTATAACTTCCTATAATGAAGTAGAAGAAAGTGTGCCAGTAATAGGTCAACTAACAA
Seq C2 exon
TTCAAACAGGTGGTCCTACAAAGCCAGGGGAGAAGAAACCTGGAAAAACAGAAATACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032332-'7-5,'7-4,8-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=0.122 C2=0.714
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(47.5=95.0)
A:
PF0004116=fn3=PD(51.2=83.7)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGACCCACCTTCCGACTTGA
R:
TTCTGTTTTTCCAGGTTTCTTCTCC
Band lengths:
170-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types