RnoEX6036655 @ rn6
Exon Skipping
Gene
ENSRNOG00000058470 | Col12a1
Description
collagen type XII alpha 1 chain [Source:RGD Symbol;Acc:2374]
Coordinates
chr8:87145176-87147467:-
Coord C1 exon
chr8:87147351-87147467
Coord A exon
chr8:87145820-87145963
Coord C2 exon
chr8:87145176-87145235
Length
144 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTTTGTGTTTTCAGATG
3' ss Score
11.9
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
TTGACCCACCTTCCGACTTGAATTTTAAAATTATAGATGAAAATACTGTCCATATGTCATGGGAGAGACCAGCTGATCCAATTGTGGGTTACAGAATAACAGTGGACTCTACAACAG
Seq A exon
ATGGGCCTACTAAAGAATTTACCCTTGCAGCTAGTACCACTGAAACCCTATTATCAAACCTTATTCCTGAAACACAGTACGTGGTCACCATCACTTCCTACGATGAAGTAGAAGAAAGTGTGCCGGTTATAGGCCAACTAACAA
Seq C2 exon
TTGAAACAGGTGATCCAGCAAAACCAGGGGAGAAGAAACCTGGAAAAACAGAGATACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058470-'10-8,'10-7,11-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=0.102 C2=0.714
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(47.5=95.0)
A:
PF0004116=fn3=PD(51.2=83.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGACCCACCTTCCGACTTGA
R:
CTCTGTTTTTCCAGGTTTCTTCTCC
Band lengths:
170-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]