GgaEX1016332 @ galGal3
Exon Skipping
Gene
ENSGALG00000015908 | COL12A1
Description
NA
Coordinates
chr3:83560278-83562993:+
Coord C1 exon
chr3:83560278-83560421
Coord A exon
chr3:83561973-83562029
Coord C2 exon
chr3:83562730-83562993
Length
57 bp
Sequences
Splice sites
3' ss Seq
CTATGTTGTATTTTGTGCAGTTC
3' ss Score
6.27
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
ATGGACCGACTAAAGAATTTACTCTTTCACCTAGCACAACCCAAACTGTCTTATCAGATCTTATACCTGAAATAGAGTATGTTGTATCAATAGCTTCATATGATGAGGTAGAGGAGAGTCTACCTGTTTTTGGCCAACTAACAA
Seq A exon
TTCAGACAGGTGGTCCAGGCATACCAGAAGAAAAGAAGGTTGAAGCTCAAATACAAA
Seq C2 exon
AATGCTCCATAAGTGCAATGACAGATTTAGTTTTCCTGGTAGATGGTTCATGGAGTGTAGGGAGAAATAACTTCAGATATATTCTGGACTTCATGGTTGCCCTTGTATCAGCTTTCGACATTGGGGAAGAAAAGACAAGAGTTGGAGTTGTTCAGTACAGTTCAGATACAAGAACAGAGTTCAATTTAAATCAGTATTTCAGAAGAAGTGATCTTCTTGATGCAATTAAAAGGATACCTTATAAAGGTGGCAACACAATGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015908-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.122 A=0.150 C2=0.000
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(51.2=83.7)
A:
NO
C2:
PF0009223=VWA=PU(46.2=89.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTACCTGTTTTTGGCCAACT
R:
GTCGAAAGCTGATACAAGGGCA
Band lengths:
147-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]