RnoEX0022789 @ rn6
Exon Skipping
Gene
ENSRNOG00000058470 | Col12a1
Description
collagen type XII alpha 1 chain [Source:RGD Symbol;Acc:2374]
Coordinates
chr8:87143247-87145963:-
Coord C1 exon
chr8:87145820-87145963
Coord A exon
chr8:87145176-87145226
Coord C2 exon
chr8:87143247-87143510
Length
51 bp
Sequences
Splice sites
3' ss Seq
TTTTGACTCAGTTGAAACAGGTG
3' ss Score
0.39
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
ATGGGCCTACTAAAGAATTTACCCTTGCAGCTAGTACCACTGAAACCCTATTATCAAACCTTATTCCTGAAACACAGTACGTGGTCACCATCACTTCCTACGATGAAGTAGAAGAAAGTGTGCCGGTTATAGGCCAACTAACAA
Seq A exon
GTGATCCAGCAAAACCAGGGGAGAAGAAACCTGGAAAAACAGAGATACAAA
Seq C2 exon
AGTGCTCTGTCAGCGCCTGGACCGACTTAGTGTTTCTTGTGGATGGCTCCTGGAGTGTGGGAAGAAATAATTTCAAGTACATTTTAGACTTCATTGTTGCTCTTGTGTCTGCCTTTGACATTGGGGAGGAGAAGACAAGGGTGGGAGTTGTTCAGTACAGCTCAGACACCAGGACTGAATTTAACTTAAATCAGTATTACCGAAGAGAAGACCTGCTTGCTGCAATTAAAAAAATACCATACAAAGGTGGCAACACAATGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058470-'11-10,'11-9,12-10
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.102 A=0.714 C2=0.000
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(51.2=83.7)
A:
NO
C2:
PF0009223=VWA=PU(46.2=89.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTGGTCACCATCACTTCCT
R:
TTCTTCCCACACTCCAGGAGC
Band lengths:
132-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]