MmuEX6067453 @ mm10
Exon Skipping
Gene
ENSMUSG00000032332 | Col12a1
Description
collagen, type XII, alpha 1 [Source:MGI Symbol;Acc:MGI:88448]
Coordinates
chr9:79703631-79706371:-
Coord C1 exon
chr9:79706228-79706371
Coord A exon
chr9:79705562-79705621
Coord C2 exon
chr9:79703631-79703894
Length
60 bp
Sequences
Splice sites
3' ss Seq
ATGGTGGGCTTTTGACTCAGTTC
3' ss Score
3.77
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
ATGGGCCTACTAAAGAATTTACCCTTGCAGCTAGTACCACTGAAACTCTATTATCAGATCTTATTCCTGAAACACAGTATGTGGTGACTATAACTTCCTATAATGAAGTAGAAGAAAGTGTGCCAGTAATAGGTCAACTAACAA
Seq A exon
TTCAAACAGGTGGTCCTACAAAGCCAGGGGAGAAGAAACCTGGAAAAACAGAAATACAAA
Seq C2 exon
AGTGCTCTGTCAGTGCCTGGACCGACCTAGTGTTTCTTGTGGACGGCTCCTGGAGTGTGGGAAGAAATAATTTCAAGTACATTTTAGACTTCATTGTTGCTCTGGTGTCTGCATTTGACATTGGGGAGGAGAAGACGAGGGTTGGAGTTGTTCAGTACAGCTCAGATACCAGGACTGAATTTAACTTAAATCAGTATTACCGAAGAGAAGACCTCCTTGCTGCAGTTAAAAAAATACCATACAAAGGCGGCAACACAATGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032332-'8-6,'8-5,9-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.122 A=0.714 C2=0.000
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(51.2=83.7)
A:
NO
C2:
PF0009223=VWA=PU(46.2=89.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGTGCCAGTAATAGGTCAACT
R:
TGCAGACACCAGAGCAACAAT
Band lengths:
141-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types