GgaEX1016334 @ galGal3
Exon Skipping
Gene
ENSGALG00000015908 | COL12A1
Description
NA
Coordinates
chr3:83562730-83563880:+
Coord C1 exon
chr3:83562730-83562993
Coord A exon
chr3:83563105-83563269
Coord C2 exon
chr3:83563707-83563880
Length
165 bp
Sequences
Splice sites
3' ss Seq
CAACTTGTCTTTTTTTTCAGGTG
3' ss Score
11.56
5' ss Seq
TAGGTATGT
5' ss Score
7.76
Exon sequences
Seq C1 exon
AATGCTCCATAAGTGCAATGACAGATTTAGTTTTCCTGGTAGATGGTTCATGGAGTGTAGGGAGAAATAACTTCAGATATATTCTGGACTTCATGGTTGCCCTTGTATCAGCTTTCGACATTGGGGAAGAAAAGACAAGAGTTGGAGTTGTTCAGTACAGTTCAGATACAAGAACAGAGTTCAATTTAAATCAGTATTTCAGAAGAAGTGATCTTCTTGATGCAATTAAAAGGATACCTTATAAAGGTGGCAACACAATGACAG
Seq A exon
GTGAAGCTATTGATTACCTGGTTAAAAACACTTTCACTGAGTCAGCTGGAGCAAGAAAAGGCTTTCCCAAAGTTGCAATTGTCATTACGGATGGAAAAGCTCAAGACGAAGTTGAAATTCCTGCAAGAGAGCTTCGCAACATAGGAGTTGAAGTTTTTTCTTTAG
Seq C2 exon
GAATCAAAGCAGCAGATGCAAAAGAACTCAAGCTAATTGCATCTCAGCCTTCACTGAAACATGTGTTCAATGTGGCTAATTTTGATGGAATTGTAGATATACAGAATGAAATTATATTGCAAGTGTGCTCTGGAGTGGATGAACAGCTGGGTGAACTGGTTAGTGGGGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015908-'8-8,'8-7,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009223=VWA=PU(46.2=89.9)
A:
PF0009223=VWA=FE(31.8=100)
C2:
PF0009223=VWA=PD(21.4=62.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGGACTTCATGGTTGCCC
R:
TTTCAGTGAAGGCTGAGATGCA
Band lengths:
242-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]