RnoEX6036656 @ rn6
Exon Skipping
Gene
ENSRNOG00000058470 | Col12a1
Description
collagen type XII alpha 1 chain [Source:RGD Symbol;Acc:2374]
Coordinates
chr8:87141735-87143510:-
Coord C1 exon
chr8:87143247-87143510
Coord A exon
chr8:87142914-87143078
Coord C2 exon
chr8:87141735-87141908
Length
165 bp
Sequences
Splice sites
3' ss Seq
ATATTTCTTTTTTCCTTCAGGGG
3' ss Score
10.65
5' ss Seq
TGGGTAGGT
5' ss Score
6.86
Exon sequences
Seq C1 exon
AGTGCTCTGTCAGCGCCTGGACCGACTTAGTGTTTCTTGTGGATGGCTCCTGGAGTGTGGGAAGAAATAATTTCAAGTACATTTTAGACTTCATTGTTGCTCTTGTGTCTGCCTTTGACATTGGGGAGGAGAAGACAAGGGTGGGAGTTGTTCAGTACAGCTCAGACACCAGGACTGAATTTAACTTAAATCAGTATTACCGAAGAGAAGACCTGCTTGCTGCAATTAAAAAAATACCATACAAAGGTGGCAACACAATGACAG
Seq A exon
GGGATGCCATTGACTACTTAGTCAAAAACACTTTCACTGAGTCTGCTGGCTCAAGAGCTGGCTTTCCTAAAGTGGCGATCATTATCACGGATGGCAAGTCTCAGGATGAAGTAGAAATTCCAGCACGGGAACTTCGGAATATTGGAGTTGAGGTTTTCTCTCTGG
Seq C2 exon
GCATTAAAGCTGCAGATGCAAAAGAACTCAAACAAATTGCATCCACACCTTCCCTGAACCACGTGTTCAATGTGGCCAATTTTGATGCAATCGTGGACATTCAGAATGAGATAATCTCCCAGGTGTGTTCAGGAGTTGATGAGCAACTTGGTGAGCTGGTCAGTGGAGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058470-'14-12,'14-11,15-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.034
Domain overlap (PFAM):
C1:
PF0009223=VWA=PU(46.2=89.9)
A:
PF0009223=VWA=FE(31.8=100)
C2:
PF0009223=VWA=PD(21.4=62.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCAGACACCAGGACTGAA
R:
AACTCCTGAACACACCTGGGA
Band lengths:
243-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]