MmuEX6067455 @ mm10
Exon Skipping
Gene
ENSMUSG00000032332 | Col12a1
Description
collagen, type XII, alpha 1 [Source:MGI Symbol;Acc:MGI:88448]
Coordinates
chr9:79702226-79703894:-
Coord C1 exon
chr9:79703631-79703894
Coord A exon
chr9:79703298-79703462
Coord C2 exon
chr9:79702226-79702399
Length
165 bp
Sequences
Splice sites
3' ss Seq
ATATTGCTTTTTTCCTTCAGGGG
3' ss Score
9.88
5' ss Seq
TGGGTAGGT
5' ss Score
6.86
Exon sequences
Seq C1 exon
AGTGCTCTGTCAGTGCCTGGACCGACCTAGTGTTTCTTGTGGACGGCTCCTGGAGTGTGGGAAGAAATAATTTCAAGTACATTTTAGACTTCATTGTTGCTCTGGTGTCTGCATTTGACATTGGGGAGGAGAAGACGAGGGTTGGAGTTGTTCAGTACAGCTCAGATACCAGGACTGAATTTAACTTAAATCAGTATTACCGAAGAGAAGACCTCCTTGCTGCAGTTAAAAAAATACCATACAAAGGCGGCAACACAATGACAG
Seq A exon
GGGATGCCATTGATTACTTAGTTAAAAACACTTTTACTGAATCTGCTGGCTCACGAGCTGGCTTTCCTAAAGTGGCAATTATTATCACGGACGGCAAGTCTCAGGACGAAGTGGAAATTCCAGCGCGGGAGCTTCGGAATATTGGAGTTGAGGTTTTCTCTCTGG
Seq C2 exon
GCATTAAAGCTGCAGATGCAAAAGAACTCAAACAAATTGCATCCACACCTTCCCTGAACCATGTGTTCAATGTGGCCAATTTTGATGCAATTGTGGACATCCAGAATGAGATAATCTCGCAGGTGTGTTCAGGAGTTGATGAGCAGCTTGGTGAGCTGGTCAGTGGAGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032332-'10-8,'10-7,11-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.034
Domain overlap (PFAM):
C1:
PF0009223=VWA=PU(46.2=89.9)
A:
PF0009223=VWA=FE(31.8=100)
C2:
PF0009223=VWA=PD(21.4=62.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGCTCTGGTGTCTGCATT
R:
TGGCCACATTGAACACATGGT
Band lengths:
248-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types