GgaEX1016335 @ galGal3
Exon Skipping
Gene
ENSGALG00000015908 | COL12A1
Description
NA
Coordinates
chr3:83563707-83565820:+
Coord C1 exon
chr3:83563707-83563880
Coord A exon
chr3:83564710-83565000
Coord C2 exon
chr3:83565218-83565820
Length
291 bp
Sequences
Splice sites
3' ss Seq
TTACTTTCAATTTCTTTCAGTGG
3' ss Score
9.05
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
GAATCAAAGCAGCAGATGCAAAAGAACTCAAGCTAATTGCATCTCAGCCTTCACTGAAACATGTGTTCAATGTGGCTAATTTTGATGGAATTGTAGATATACAGAATGAAATTATATTGCAAGTGTGCTCTGGAGTGGATGAACAGCTGGGTGAACTGGTTAGTGGGGAAGAAG
Seq A exon
TGGTGGAGCCTGCTTCAAATCTAGTAGCCACTCAGATCTCCTCAAAATCTGTTAGGATCACTTGGGATCCATCCACAAGCCAAATAACTGGCTATCGGGTACAGTTCATCCCAATGATAGCTGGTGGAAAACAACATGTGTTGAGTGTGGGTCCTCAGACTACTGCTCTGAATGTTAAAGATCTCTCTCCAGACACAGAGTATCAAATCAATGTTTATGCAATGAAAGGACTGACCCCCAGTGAGCCGATAACTATAATGGAAAAAACACAACAAGTCAAAGTTCAAGTGG
Seq C2 exon
AGTGCTCACGTGGTGTGGATGTAAAAGCTGACGTTGTGTTTTTAGTGGATGGCTCCTACAGCATTGGTATCGCCAATTTTGTTAAAGTAAGAGCCTTTTTGGAAGTGTTAGTTAAAAGCTTTGAGATATCGCCTCGAAAAGTACAGATAAGTCTTGTCCAGTACAGCAGAGATCCCCATATGGAGTTTTCTTTGAACAGATATAACAGAGTGGAAGACATAATTCAAGCTATTAACACCTTCCCCTACAGAGGTGGATCTACCAACACAGGCAAAGCGATGACATATGTGAGGGAGAAAGTATTTGTTACCAGCAAAGGATCAAGACCAAATGTGCCAAGAGTCATGATTCTTATCACTGATGGAAAATCATCAGATGCTTTTAAAGAACCTGCAATAAAGCTGAGGGATGCAGACGTAGAAATATTTGCAGTTGGTGTGAAGGATGCAGTGCGTACAGAGTTAGAAGCAATTGCATCACCTCCTGCTGAAACCCATGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015908-'10-10,'10-9,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009223=VWA=PD(21.4=62.7)
A:
PF0004116=fn3=WD(100=82.7)
C2:
PF0009223=VWA=WD(100=87.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGGTGAACTGGTTAGTGG
R:
CGCTTTGCCTGTGTTGGTAGA
Band lengths:
307-598
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]