RnoEX0022791 @ rn6
Exon Skipping
Gene
ENSRNOG00000058470 | Col12a1
Description
collagen type XII alpha 1 chain [Source:RGD Symbol;Acc:2374]
Coordinates
chr8:87138557-87141908:-
Coord C1 exon
chr8:87141735-87141908
Coord A exon
chr8:87139581-87139871
Coord C2 exon
chr8:87138557-87139159
Length
291 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTCTTTTCCTTTTAGTCA
3' ss Score
10.35
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
Exon sequences
Seq C1 exon
GCATTAAAGCTGCAGATGCAAAAGAACTCAAACAAATTGCATCCACACCTTCCCTGAACCACGTGTTCAATGTGGCCAATTTTGATGCAATCGTGGACATTCAGAATGAGATAATCTCCCAGGTGTGTTCAGGAGTTGATGAGCAACTTGGTGAGCTGGTCAGTGGAGAAGAAG
Seq A exon
TCATCGAGCCTCCTTCAAATCTGGTAGTCACAGATCTCTCATCAAAATTCATTAGGCTGAGATGGGATCCGTCTCCCAGCGCTGTGACTGGCTATAAGATCCTCCTCACACCAATGGCTGCCGGGAGCCGCCATCACGCTTTGAGTGTGGGGCCCCAGACGACCACGCTCAATGTTCGTGACCTTTCAGCTGACACAGAATACCAGATCAGCGTTTTTGCCATGAAGGGGCTAACATCCAGTGAGCCTGTTTCAGTCATGGAGAAGACACAGCCAATGAAAGTTCAAGTAG
Seq C2 exon
AATGTTCACGTGGTGTGGATATAAAAGCCGACATCGTGTTTTTGGTTGATGGTTCCTACAGCATCGGCATTGCAAACTTTGTTAAAGTTAGAGCCTTTTTGGAAGTTCTTGCAAAAAGTTTTGAGATTTCTCCAAACAGGGTGCAGATAAGCCTTGTCCAGTACAGCAGAGACCCTCACACTGAATTTACATTGAAGGAGTTTAACAGAGTTGAAGACATAATCAAAGCAATAAATAACTTCCCGTACAGGGGAGGATCCACAAACACAGGCAAAGCAATGACTTACGTCAGAGAGAAAATATTTGTGCCTAACAAAGGCTCCAGAAGCAACGTACCAAAGGTGATGATTCTCATCACAGATGGGAAGTCGTCAGATGCTTTCAGGGACCCTGCTATAAAACTCAGGAACTCGGACGTGGAGATCTTCGCAGTTGGTGTAAAGGATGCTGTGCGCTCAGAACTGGAAGCCATTGCCTCTCCTCCCGCTGAGACACATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058470-'17-16,'17-14,19-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=0.010 C2=0.000
Domain overlap (PFAM):
C1:
PF0009223=VWA=PD(21.4=62.7)
A:
PF0004116=fn3=WD(100=82.7)
C2:
PF0009223=VWA=WD(100=87.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCACACCTTCCCTGAACCA
R:
GGACAAGGCTTATCTGCACCC
Band lengths:
293-584
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]