MmuEX6067457 @ mm10
Exon Skipping
Gene
ENSMUSG00000032332 | Col12a1
Description
collagen, type XII, alpha 1 [Source:MGI Symbol;Acc:MGI:88448]
Coordinates
chr9:79699249-79702399:-
Coord C1 exon
chr9:79702226-79702399
Coord A exon
chr9:79700257-79700547
Coord C2 exon
chr9:79699249-79699851
Length
291 bp
Sequences
Splice sites
3' ss Seq
TCTAATTTTTTTCTTCTTAGTCA
3' ss Score
7.1
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
GCATTAAAGCTGCAGATGCAAAAGAACTCAAACAAATTGCATCCACACCTTCCCTGAACCATGTGTTCAATGTGGCCAATTTTGATGCAATTGTGGACATCCAGAATGAGATAATCTCGCAGGTGTGTTCAGGAGTTGATGAGCAGCTTGGTGAGCTGGTCAGTGGAGAAGAAG
Seq A exon
TCATCGAGCCTCCTTCAAATCTGGTAGTCACTGAACTCTCATCAAAATACATTAGGCTGAGCTGGGATCCGTCTCCCAGCGCTGTGACCGGCTATAAGATCCTCCTCACACCAATGGCAGCGGGAAGCCGGCATCACGCTTTGAGTGTGGGGCCCCAGACGACCACGCTCAATGTTCGTGACCTTACAGCGGACACGGAGTACCAGATCAGCGTTTTTGCCATGAAGGGCCTGACGTCCAGTGAACCCACTTCGGTCATGGAGAAGACGCAGCCAATGAAAGTTCAAGTGG
Seq C2 exon
AATGTTCACGTGGTGTGGATATAAAAGCTGACATCGTGTTTTTGGTTGATGGTTCCTATAGCATCGGGATTGCAAATTTTGTTAAAGTTCGAGCCTTTTTAGAAGTTCTTGCAAAAAGTTTTGAGATTTCTCCGAACAGGGTGCAGATAAGCCTTGTACAGTACAGCAGGGACCCTCACACCGAGTTCACATTGAAGGAGTTCAACAGAGTTGAAGATATAATCAAAGCAATAAACACCTTCCCGTACAGGGGAGGATCCACAAACACAGGCAAAGCCATGACTTATGTCAGAGAGAAAATATTTGTGCCAAACAAAGGTTCCAGAAGCAACGTACCGAAGGTGATGATTCTCATCACAGATGGGAAGTCATCAGATGCTTTCAGGGATCCTGCTATAAAACTCAGGAACTCCGACGTGGAGATCTTCGCAGTCGGTGTAAAGGACGCTGTGCGCTCAGAACTGGAAGCCATTGCCTCTCCTCCTGCTGAGACCCACGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032332-'12-12,'12-9,14-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=0.092 C2=0.000
Domain overlap (PFAM):
C1:
PF0009223=VWA=PD(21.4=62.7)
A:
PF0004116=fn3=WD(100=83.7)
C2:
PF0009223=VWA=WD(100=87.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACACCTTCCCTGAACCATG
R:
AGGGTCCCTGCTGTACTGTAC
Band lengths:
308-599
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types