GgaEX1016336 @ galGal3
Exon Skipping
Gene
ENSGALG00000015908 | COL12A1
Description
NA
Coordinates
chr3:83564710-83567535:+
Coord C1 exon
chr3:83564710-83565000
Coord A exon
chr3:83565218-83565820
Coord C2 exon
chr3:83567263-83567535
Length
603 bp
Sequences
Splice sites
3' ss Seq
GTGATTCTTTTTCTTTACAGAGT
3' ss Score
9.73
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
TGGTGGAGCCTGCTTCAAATCTAGTAGCCACTCAGATCTCCTCAAAATCTGTTAGGATCACTTGGGATCCATCCACAAGCCAAATAACTGGCTATCGGGTACAGTTCATCCCAATGATAGCTGGTGGAAAACAACATGTGTTGAGTGTGGGTCCTCAGACTACTGCTCTGAATGTTAAAGATCTCTCTCCAGACACAGAGTATCAAATCAATGTTTATGCAATGAAAGGACTGACCCCCAGTGAGCCGATAACTATAATGGAAAAAACACAACAAGTCAAAGTTCAAGTGG
Seq A exon
AGTGCTCACGTGGTGTGGATGTAAAAGCTGACGTTGTGTTTTTAGTGGATGGCTCCTACAGCATTGGTATCGCCAATTTTGTTAAAGTAAGAGCCTTTTTGGAAGTGTTAGTTAAAAGCTTTGAGATATCGCCTCGAAAAGTACAGATAAGTCTTGTCCAGTACAGCAGAGATCCCCATATGGAGTTTTCTTTGAACAGATATAACAGAGTGGAAGACATAATTCAAGCTATTAACACCTTCCCCTACAGAGGTGGATCTACCAACACAGGCAAAGCGATGACATATGTGAGGGAGAAAGTATTTGTTACCAGCAAAGGATCAAGACCAAATGTGCCAAGAGTCATGATTCTTATCACTGATGGAAAATCATCAGATGCTTTTAAAGAACCTGCAATAAAGCTGAGGGATGCAGACGTAGAAATATTTGCAGTTGGTGTGAAGGATGCAGTGCGTACAGAGTTAGAAGCAATTGCATCACCTCCTGCTGAAACCCATGTTTACACAGTGGAAGATTTTGATGCTTTCCAAAGAATATCATTTGAACTTACACAGTCTGTCTGCCTACGGATTGAGCAGGAACTGGCTGCAATAAGGAAAAAAT
Seq C2 exon
CTTACGTACCTGCAAAGAACATGGTCTTTTCTGACGTAACATCTGACAGTTTCAAAGTGAGCTGGTCTGCAGCTGGATCTGAGGTTTTGTCCTATCTCATTAAATATAAAGTAGCAATCGGCGGAGATGAATTCATTGTTTCAGTCCCAGCTTCAAGTACTAGCTCAGTTCTCACCAACTTGCTGCCTGAGACTACTTATGCAGTCAGTGTGATTGCTGAATATGAAGATGGCGATGGCCCTCCTTTGGATGGAGAGGAAACCACGTTAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015908-'11-12,'11-10,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.163
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=82.7)
A:
PF0009223=VWA=WD(100=87.1)
C2:
PF0004116=fn3=WD(100=87.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTTGAGTGTGGGTCCTCA
R:
AGTCTCAGGCAGCAAGTTGGT
Band lengths:
349-952
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]