MmuEX6067458 @ mm10
Exon Skipping
Gene
ENSMUSG00000032332 | Col12a1
Description
collagen, type XII, alpha 1 [Source:MGI Symbol;Acc:MGI:88448]
Coordinates
chr9:79697401-79700547:-
Coord C1 exon
chr9:79700257-79700547
Coord A exon
chr9:79699249-79699851
Coord C2 exon
chr9:79697401-79697673
Length
603 bp
Sequences
Splice sites
3' ss Seq
GATTTTCTTTCTCTTCACAGAAT
3' ss Score
10.78
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
TCATCGAGCCTCCTTCAAATCTGGTAGTCACTGAACTCTCATCAAAATACATTAGGCTGAGCTGGGATCCGTCTCCCAGCGCTGTGACCGGCTATAAGATCCTCCTCACACCAATGGCAGCGGGAAGCCGGCATCACGCTTTGAGTGTGGGGCCCCAGACGACCACGCTCAATGTTCGTGACCTTACAGCGGACACGGAGTACCAGATCAGCGTTTTTGCCATGAAGGGCCTGACGTCCAGTGAACCCACTTCGGTCATGGAGAAGACGCAGCCAATGAAAGTTCAAGTGG
Seq A exon
AATGTTCACGTGGTGTGGATATAAAAGCTGACATCGTGTTTTTGGTTGATGGTTCCTATAGCATCGGGATTGCAAATTTTGTTAAAGTTCGAGCCTTTTTAGAAGTTCTTGCAAAAAGTTTTGAGATTTCTCCGAACAGGGTGCAGATAAGCCTTGTACAGTACAGCAGGGACCCTCACACCGAGTTCACATTGAAGGAGTTCAACAGAGTTGAAGATATAATCAAAGCAATAAACACCTTCCCGTACAGGGGAGGATCCACAAACACAGGCAAAGCCATGACTTATGTCAGAGAGAAAATATTTGTGCCAAACAAAGGTTCCAGAAGCAACGTACCGAAGGTGATGATTCTCATCACAGATGGGAAGTCATCAGATGCTTTCAGGGATCCTGCTATAAAACTCAGGAACTCCGACGTGGAGATCTTCGCAGTCGGTGTAAAGGACGCTGTGCGCTCAGAACTGGAAGCCATTGCCTCTCCTCCTGCTGAGACCCACGTGTTCACAGTGGAGGATTTTGATGCCTTTCAGAGGATATCATTTGAACTCACACAGTCCATCTGTCTTAGAATTGAGCAAGAGTTGGCAGCTATAAAGAAGAAAG
Seq C2 exon
CTTACGTTCCACCAAAGGATCTGAGGTTTACTCAGGTAACTGCTAATAGTTTCAAAGCTGAATGGTCTCCTCCTGGAGACAATGTCTTTTCGTATCACGTCACATACAAGGATGCTAATGGTGATGATGAGGTCACAGTGGTGGAGCCAGCCTCCAGCACTAGTGTTGTTCTCAACAACCTGAGGCCAGAAACCCTGTACTTGGTGAATGTGACAGCCGAGTATGAGGACGGCTTCAGTGTTCCTATAACTGGGGAGGAGACCACTGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032332-'14-13,'14-12,16-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.092 A=0.000 C2=0.196
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=83.7)
A:
PF0009223=VWA=WD(100=87.6)
C2:
PF0004116=fn3=WD(100=87.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACGACCACGCTCAATGTTC
R:
TCGGCTGTCACATTCACCAAG
Band lengths:
355-958
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types