RnoEX0022792 @ rn6
Exon Skipping
Gene
ENSRNOG00000058470 | Col12a1
Description
collagen type XII alpha 1 chain [Source:RGD Symbol;Acc:2374]
Coordinates
chr8:87136377-87139871:-
Coord C1 exon
chr8:87139581-87139871
Coord A exon
chr8:87138557-87139159
Coord C2 exon
chr8:87136377-87136649
Length
603 bp
Sequences
Splice sites
3' ss Seq
GATTTTCTTTCTCTTCACAGAAT
3' ss Score
10.78
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
TCATCGAGCCTCCTTCAAATCTGGTAGTCACAGATCTCTCATCAAAATTCATTAGGCTGAGATGGGATCCGTCTCCCAGCGCTGTGACTGGCTATAAGATCCTCCTCACACCAATGGCTGCCGGGAGCCGCCATCACGCTTTGAGTGTGGGGCCCCAGACGACCACGCTCAATGTTCGTGACCTTTCAGCTGACACAGAATACCAGATCAGCGTTTTTGCCATGAAGGGGCTAACATCCAGTGAGCCTGTTTCAGTCATGGAGAAGACACAGCCAATGAAAGTTCAAGTAG
Seq A exon
AATGTTCACGTGGTGTGGATATAAAAGCCGACATCGTGTTTTTGGTTGATGGTTCCTACAGCATCGGCATTGCAAACTTTGTTAAAGTTAGAGCCTTTTTGGAAGTTCTTGCAAAAAGTTTTGAGATTTCTCCAAACAGGGTGCAGATAAGCCTTGTCCAGTACAGCAGAGACCCTCACACTGAATTTACATTGAAGGAGTTTAACAGAGTTGAAGACATAATCAAAGCAATAAATAACTTCCCGTACAGGGGAGGATCCACAAACACAGGCAAAGCAATGACTTACGTCAGAGAGAAAATATTTGTGCCTAACAAAGGCTCCAGAAGCAACGTACCAAAGGTGATGATTCTCATCACAGATGGGAAGTCGTCAGATGCTTTCAGGGACCCTGCTATAAAACTCAGGAACTCGGACGTGGAGATCTTCGCAGTTGGTGTAAAGGATGCTGTGCGCTCAGAACTGGAAGCCATTGCCTCTCCTCCCGCTGAGACACATGTGTTCACAGTGGAGGACTTCGATGCCTTTCAGAGGATATCGTTTGAACTCACACAGTCTATCTGTCTTAGAATTGAGCAAGAGTTGGCAGCTATAAAGAAGAAAG
Seq C2 exon
CTTATGTGCCGCCAAAGGATCTGAGATTTACTCAGGTAACTGCTAATAGTTTCAAAGCTGAATGGTCTCCTGCTGGAGACAACGTCTTCTCGTATCACATCACGTACAAGGACACTACTGGTGACGATGAGGTCACAGTGGTGGAGCCAGCCTCCAGCACCAGTGTTGTTCTCAGCAACCTGAAACCAGAGACCCTGTACTTGGTGAATGTGACGGCAGAGTATGAGGATGGCTTCAGCGTCCCTGTAGTTGGGGAGGAGACCACGGCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058470-'19-17,'19-16,21-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=0.000 C2=0.130
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=82.7)
A:
PF0009223=VWA=WD(100=87.6)
C2:
PF0004116=fn3=WD(100=87.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACGACCACGCTCAATGTTC
R:
TCTGCCGTCACATTCACCAAG
Band lengths:
355-958
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]