GgaEX1016505 @ galGal3
Exon Skipping
Gene
ENSGALG00000005797 | COL20A1
Description
NA
Coordinates
chr20:8850006-8851103:+
Coord C1 exon
chr20:8850006-8850059
Coord A exon
chr20:8850455-8850550
Coord C2 exon
chr20:8851050-8851103
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTTCATATCTTTGGCTTTAGGGT
3' ss Score
9.63
5' ss Seq
GTGGTATGT
5' ss Score
7.64
Exon sequences
Seq C1 exon
GGCAGCCCTGGGAGGAGAGGACCACAAGGCGAGCAGGGGGAGCCGGGCCCCAAG
Seq A exon
GGTGAACCAGGCCCACCTGGAAAAGTGGGACCAGCAGGTCCTAGTGGCCAGCAAGGCTCCCCAGGTTCCCAAGGAATCACAATTCAGGGCCCTGTG
Seq C2 exon
GGACCACCAGGTATTAAAGGAGAGAAAGGAGACACTGGAAGTCCTGGCATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005797-'29-32,'29-31,30-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(28.3=100)
A:
PF0139113=Collagen=PD(46.7=87.5),PF0139113=Collagen=PU(8.9=15.6)
C2:
PF0139113=Collagen=FE(30.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCCTGGGAGGAGAGG
R:
CATGCCAGGACTTCCAGTGTC
Band lengths:
103-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]