GgaEX1016831 @ galGal4
Exon Skipping
Gene
ENSGALG00000002546 | COL5A1
Description
collagen alpha-1(V) chain precursor [Source:RefSeq peptide;Acc:NP_990121]
Coordinates
chr17:7554971-7561096:+
Coord C1 exon
chr17:7554971-7555039
Coord A exon
chr17:7558616-7558849
Coord C2 exon
chr17:7560881-7561096
Length
234 bp
Sequences
Splice sites
3' ss Seq
CCCTTCTCCACTTCCCATAGCTC
3' ss Score
8.9
5' ss Seq
GCGGTACGT
5' ss Score
10.27
Exon sequences
Seq C1 exon
GCTAGAATTACTTCTTGGCCAAAGGAAAACCCAGGCTCCTGGTTCAGTGAATTCAAGCGCGGTAAACTG
Seq A exon
CTCTCCTATGTGGATTCGGATGGGAACCCCATCGGAGTGGTACAGATGACGTTCCTCAGGCTGCTGAGTGCCTCGGCCCACCAGAACATCACTTACAACTGCTACCAGTCCGTAGCCTGGCACGATGCCACCACTGACAGCTACGACAAGGCCATCCGCTTCCTGGGCTCCAACGACGAGGAGATGTCCTACGACAACAACCCCTACATCCGAGCTGCATTCGATGGCTGCGCG
Seq C2 exon
GCAAAGAAGGGCTATCAGAAGACTGTCCTGGAAATCAACACGCCCAAGGTCGAGCAAGTGCCTATCGTCGACATCATGTTCAATGACTTCGGAGAAGCATCACAGAAATTTGGATTCGAGGTGGGACCAGCTTGCTTCATGGGCTAAGAGCCACCTGAAAACTAGTCTCCAAATGAGCAACCTCGTAACCTCATTGCGCCATTTAATTAATTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002546_MULTIEX1-3/3=1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.130 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0141013=COLFI=FE(10.4=100)
A:
PF0141013=COLFI=FE(36.3=100)
C2:
PF0141013=COLFI=PD(21.2=91.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAGAATTACTTCTTGGCCAAAGG
R:
ATTAAATGGCGCAATGAGGTTACG
Band lengths:
276-510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]