DreEX6083083 @ danRer10
Exon Skipping
Gene
ENSDARG00000012593 | col5a1
Description
procollagen, type V, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-041105-6]
Coordinates
chr21:6790195-6803529:+
Coord C1 exon
chr21:6790195-6790263
Coord A exon
chr21:6797350-6797583
Coord C2 exon
chr21:6799837-6803529
Length
234 bp
Sequences
Splice sites
3' ss Seq
CTGTGTGTTTGTCTGTTCAGCTC
3' ss Score
9.52
5' ss Seq
GCGGTAAGA
5' ss Score
9.63
Exon sequences
Seq C1 exon
AGCAAAATGGCTCGCTGGCCCAAAGACAGTCCAGGCACATGGTATAGTCGCTACAAGAGAGGGTCAATG
Seq A exon
CTCTCGTATGTGGATGCGGAGGGCAATGCCATCGGTGTGGTGCAGATGACGTTCCTGCGTTTGCTCAGTGCCACGGCCCGGCAGAACCTCACCTACAACTGTTACCAGTCTGTGGCCTGGCACGACCAAGACCAGGACTCTTACGATAAAGCCATCCGCTTCCTGGGCTCCAATGACGAGGAGATGTCTTACGATAATAACCCGTACATCAGAGCCGTAGTCGACGGCTGCGCG
Seq C2 exon
TTGAAAAAGGGCTATGAAAAGACTATTCTTGAGATCAACACACCGAAAGTGGAGCAGGTACCGTTTGTTGACATTATGTTCAACGATTTCGGCGGAGCGACGCAGAAGTTCGGCTTTGAGGTCGGACCAGCCTGCTTCATCGGTTAAGACTGCTCAAAAACAAAACATATTCATCTTCTCCAAAAAAAAAACCAAAACAAAACACAAGAAAGAAATAGGACGACTTATTTGTAAAGTTTTCGTGTTTCCAAACAAACCCAACCCATACCAAAGTAAGAAATTTGAAGAAAGAACGGATGTCTAAAACAATGGGTTCGTAAAGCAACCTTTTTAACCTCAGTGTACCCTCTGCATCACATGCAAGTTTTGAAACTGGATGAGGTCATCGCTCGTGTCTCTCCAAGCCCCGCCCACTTTACTCTTCGCCCCTACCACAGGCTGTATAGACAGATTAGATTCCTCTTGGATTTGTAGCTCAACGCGCGTCCGGTGCTCAGATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012593-'70-71,'70-70,77-71=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.130 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0141013=COLFI=FE(10.4=100)
A:
PF0141013=COLFI=FE(36.8=100)
C2:
PF0141013=COLFI=PD(21.7=92.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGCACATGGTATAGTCGC
R:
GGGTTGGGTTTGTTTGGAAACA
Band lengths:
303-537
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]