RnoEX6011186 @ rn6
Exon Skipping
Gene
ENSRNOG00000023148 | Col11a1
Description
collagen type XI alpha 1 chain [Source:RGD Symbol;Acc:2372]
Coordinates
chr2:217050925-217056523:+
Coord C1 exon
chr2:217050925-217050993
Coord A exon
chr2:217052766-217052999
Coord C2 exon
chr2:217054471-217056523
Length
234 bp
Sequences
Splice sites
3' ss Seq
TCATTACTCTTTTCTGCCAGCTT
3' ss Score
6.81
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
GTAAGACTTTCATCTTGGCCGAAGGAGAAACCAGGAAGTTGGTACAGTGAATTTAAGAGAGGAAAACTG
Seq A exon
CTTTCCTATTTAGATGTGGAAGGCAATTCCATCAATATGGTACAAATGACATTCCTGAAACTCCTGACTGCCTCTGCCAGACAAAACTTCACCTACAATTGCCACCAGTCAACTGCTTGGTATGACGTCTTATCAGGAAGTTATGACAAAGCACTTCGGTTTCTGGGATCTAATGATGAGGAAATGTCCTACGAGAACAACCCACACATCAAAGCTTTGTATGACGGCTGTGCG
Seq C2 exon
TCCCGAAAAGGCTATGAAAAGACAGTGATTGAGATCAATACTCCGAAAATTGATCAAGTACCCATCATTGATGTAATGATCAATGATTTTGGTGATCAGAATCAGAAGTTTGGATTTGAAGTTGGTCCAGCTTGCTTTCTTGGCTAAGATTAGGATGAAGACCATATGAAACCAACAGAAAAAATACCTTGGTGCCGCCAATCCATTTTATGCCACATGCAAGTTTTGAATAAGGACGGTATAGGAAACCTGTTTAGGAATCACTGATGCCTGACGGAGGCACAGTCCAAGGAAAGAAGTTCTGGTAGTCATAACCATGTAAGGTAGTGGCTGAGATGGCAACAGGGCTCATTCTTGATTCTCAACCCTCATCTCTCCTTTTCCTATTTGGATTTTGTTGGTGCTGTAGAAAACAAAAAGAGAGAAAATATATATTCGTAAAAAAAAATGGTGCTCATTCCCATCCATCAAAGATATAGTAAAAGTGTCTTTAATAAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023148-'74-75,'74-74,75-75=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.087 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0141013=COLFI=FE(10.4=100)
A:
PF0141013=COLFI=FE(36.3=100)
C2:
PF0141013=COLFI=PD(21.2=91.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAGGAGAAACCAGGAAGTTGG
R:
ACAGGTTTCCTATACCGTCCT
Band lengths:
303-537
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]