HsaEX6032464 @ hg38
Exon Skipping
Gene
ENSG00000060718 | COL11A1
Description
collagen type XI alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2186]
Coordinates
chr1:102876467-102881765:-
Coord C1 exon
chr1:102881697-102881765
Coord A exon
chr1:102879683-102879916
Coord C2 exon
chr1:102876467-102878165
Length
234 bp
Sequences
Splice sites
3' ss Seq
TTTTATTCCTTTATTCCTAGCTT
3' ss Score
6.54
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
GTAAGAATTTCATCATGGCCAAAGGAGAAACCAGGAAGTTGGTTTAGTGAATTTAAGAGGGGAAAACTG
Seq A exon
CTTTCATACTTAGATGTTGAAGGAAATTCCATCAATATGGTGCAAATGACATTCCTGAAACTTCTGACTGCCTCTGCTCGGCAAAATTTCACCTACCACTGTCATCAGTCAGCAGCCTGGTATGATGTGTCATCAGGAAGTTATGACAAAGCACTTCGCTTCCTGGGATCAAATGATGAGGAGATGTCCTATGACAATAATCCTTTTATCAAAACACTGTATGATGGTTGTGCG
Seq C2 exon
TCCAGAAAAGGCTATGAAAAGACTGTCATTGAAATCAATACACCAAAAATTGATCAAGTACCTATTGTTGATGTCATGATCAATGACTTTGGTGATCAGAATCAGAAGTTCGGATTTGAAGTTGGTCCTGTTTGTTTTCTTGGCTAAGATTAAGACAAAGAACATATCAAATCAACAGAAAATATACCTTGGTGCCACCAACCCATTTTGTGCCACATGCAAGTTTTGAATAAGGATGGTATAGAAAACAACGCTGCATATACAGGTACCATTTAGGAAATACCGATGCCTTTGTGGGGGCAGAATCACATGGCAAAAGCTTTGAAAATCATAAAGATATAAGTTGGTGTGGCTAAGATGGAAACAGGGCTGATTCTTGATTCCCAATTCTCAACTCTCCTTTTCCTATTTGAATTTCTTTGGTGCTGTAGAAAACAAAAAAAGAAAAATATATATTCATAAAAAATATGGTGCTCATTCTCATCCATCCAGGATGTACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000060718-'95-98,'95-97,96-98=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.087 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0141013=COLFI=FE(10.4=100)
A:
PF0141013=COLFI=FE(36.3=100)
C2:
PF0141013=COLFI=PD(21.2=91.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGGCCAAAGGAGAAACCA
R:
TCCTTATTCAAAACTTGCATGTGGC
Band lengths:
293-527
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains