DreEX0022776 @ danRer10
Exon Skipping
Gene
ENSDARG00000026165 | col11a1a
Description
collagen, type XI, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-070209-167]
Coordinates
chr24:28684862-28691826:-
Coord C1 exon
chr24:28691758-28691826
Coord A exon
chr24:28689230-28689463
Coord C2 exon
chr24:28684862-28686160
Length
234 bp
Sequences
Splice sites
3' ss Seq
ATTTTCATTTTCCCTTCAAGCTT
3' ss Score
8.5
5' ss Seq
GCGGTAAGA
5' ss Score
9.63
Exon sequences
Seq C1 exon
GTGAGAATATCTTCATGGCCCAAAGAGGTGCCCGGCTCCTGGTTCAGTGAATTTAAGCGTGGCAAAATA
Seq A exon
CTTTCATACGTGGACGCAGAAGGCAACTCGATAAACATGGTCCAGATGACGTTCCTCAAACTACTGACAGCCTCCGCCAGGCAAAACCTGACCTACAGCTGCCACCAGTCAGTGGCCTGGCACGACGCCACTACGGACAGCTATGACAGAGCATTACACTTCCTCGGCTCCAACGACGAGGAGATCTCATACGACAACAACCCCTACATCAAGGCCCTGTCAGACGGCTGTGCG
Seq C2 exon
GTGAGGAAGGGCTATGGAAAGACAGTACTGGAGATTAACACTCCCAAAATTGATCAGGTTCCAATCGTCGACGTGAAGTTCACTGACTTTGGGGATCCCAACCAGAAATTTGGATTTGAAGTTGGTCCAGTCTGCTTCCTTGGCTAAACAAAACACAGACAAAGAAAAAATACCAATAACTTGGCTGGGTAGGACGGGTTGTGCGCACGAGGCAAGACTTTCTTGATCTCATCAAACCATCGAGGCCCTGTTCCTGCCACATGCAAGTTTTGAATATTAAAAAAATGGGGTAGCGAACACGTCTTACCATGTATGTATGTATTACCCAGGAAAATACTTGTTGCCCTTGTGGGGCAAGGATCACATGACATGAAACCTGTTATGGAACGAAAAGGTGAAGGACAACGTCAAGCCAAGGCAAGCGGTTGGAGAGTCGATGAAAGGGAGGACCTCTCAACGGTGCAGTGCAAATCAAAAAAAAAAAAAAAGAAAAACTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026165-'74-72,'74-70,75-72
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0141013=COLFI=FE(10.4=100)
A:
PF0141013=COLFI=FE(36.3=100)
C2:
PF0141013=COLFI=PD(21.2=91.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCATGGCCCAAAGAGGTG
R:
GGGCCTCGATGGTTTGATGAG
Band lengths:
308-542
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]