GgaEX6044053 @ galGal3
Exon Skipping
Gene
ENSGALG00000005180 | COL11A1
Description
NA
Coordinates
chr8:12026118-12029498:+
Coord C1 exon
chr8:12026118-12026186
Coord A exon
chr8:12026850-12027083
Coord C2 exon
chr8:12028878-12029498
Length
234 bp
Sequences
Splice sites
3' ss Seq
TGACTTCTTATATTTTTTAGCTT
3' ss Score
8.35
5' ss Seq
GCGGTAAGT
5' ss Score
11.37
Exon sequences
Seq C1 exon
GTTAGAATTTCATCTTGGCCAAAAGAGAATCCAGGATCTTGGTTTAGTGAATTTAAGCGTGGCAAACTT
Seq A exon
CTTTCATATGTGGATGTTGAAGGCAATTCCATTAATATGGTTCAAATGACATTCCTTAAACTACTGAGTGCCTCTGCCAGACAAAATTTCACATACAACTGCCATCAGTCTGTAGCTTGGCATGATGCCTCAACTGACAGCTATGACAAAGCACTAAGGTTCTTAGGATCAAACGATGAAGAGATGTCTTACGACAACAATCCTTACATCAAAGCGCTTCTTGATGGCTGTGCG
Seq C2 exon
TCAAGAAAGGGCTACGCAAAGACAGTGATTGAAATCAACACACCCAAAATAGACCAAGTGCCTATAGTTGATGTGATGATCAATGACTTTGGCGATCAAAGCCAAAAGTTTGGATTTGAGGTTGGTCCTGTCTGCTTCCTTGGTTAAATTTAAGAAAAAGATCAGATCATCAAAAACGTGGCACTCTGGTGCTACCAACCCACTTCATGCCATATGCAAGTTTTGAATAAGAATGGCATAGAAAATACGTCTTGCTGTGTACTTATGTCTCATCTAGAAAGTAACTGTTGCCCTTGAAGGGCCAGAATCACATGACTTAAACTAATTCTGCAAGGATGCTGTGGCACAGACAGACAACATAGGGCTCACTTTATCAACACCCCACCCCACCTTTGGATACCTTTGGTGCTGTTTAAAAAAAGAAAAAAAGAACAATGACATGGTGCTCCTTTGATTACAAAGAGGTGTTATGAAAGTGTTTAATAAACTGTAATTATTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005180-'70-71,'70-70,71-71=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.087 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0141013=COLFI=FE(10.4=100)
A:
PF0141013=COLFI=FE(36.3=100)
C2:
PF0141013=COLFI=PD(21.2=91.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGAATTTAAGCGTGGCAAACT
R:
AGACATAAGTACACAGCAAGACGT
Band lengths:
294-528
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]