GgaEX1016847 @ galGal3
Exon Skipping
Gene
ENSGALG00000002546 | Q90689_CHICK
Description
NA
Coordinates
chr17:8228174-8229746:+
Coord C1 exon
chr17:8228174-8228281
Coord A exon
chr17:8229367-8229420
Coord C2 exon
chr17:8229693-8229746
Length
54 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTTCTCTCTTTGCAGGGT
3' ss Score
13.36
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GGTCCAAAAGGTGAAAGAGGTGAAAAGGGTGAAGCAGGTCCCTCTGGTGCCGCTGGTCCACCTGGCCCTAAAGGTCCACCAGGTGATGATGGTCCCAAAGGCAGCCCT
Seq A exon
GGTCCAGTTGGTTTCCCTGGTGACCCCGGTCCTCCTGGAGAGCCTGGTCCAGCT
Seq C2 exon
GGTCAAGATGGTCCCCCTGGTGACAAAGGTGACGACGGCGAACCTGGTCAGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002546-'58-61,'58-60,59-61=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(35.4=100),PF0139113=Collagen=PU(6.2=16.7)
A:
PF0139113=Collagen=FE(17.2=100),PF0139113=Collagen=FE(17.5=100)
C2:
PF0139113=Collagen=FE(17.2=100),PF0139113=Collagen=FE(17.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAAAAGGGTGAAGCAGGT
R:
GTTCGCCGTCGTCACCTTT
Band lengths:
133-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]