GgaEX1016847 @ galGal4
Exon Skipping
Gene
ENSGALG00000002546 | COL5A1
Description
collagen alpha-1(V) chain precursor [Source:RefSeq peptide;Acc:NP_990121]
Coordinates
chr17:7546475-7548047:+
Coord C1 exon
chr17:7546475-7546582
Coord A exon
chr17:7547668-7547721
Coord C2 exon
chr17:7547994-7548047
Length
54 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTTCTCTCTTTGCAGGGT
3' ss Score
13.36
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GGTCCAAAAGGTGAAAGAGGTGAAAAGGGTGAAGCAGGTCCCTCTGGTGCCGCTGGTCCACCTGGCCCTAAAGGTCCACCAGGTGATGATGGTCCCAAAGGCAGCCCT
Seq A exon
GGTCCAGTTGGTTTCCCTGGTGACCCCGGTCCTCCTGGAGAGCCTGGTCCAGCT
Seq C2 exon
GGTCAAGATGGTCCCCCTGGTGACAAAGGTGACGACGGCGAACCTGGTCAGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002546_MULTIEX2-23/23=22-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(16.0=41.7),PF0139113=Collagen=FE(38.0=100)
A:
PF0139113=Collagen=FE(18.5=100)
C2:
PF0139113=Collagen=PD(17.4=88.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAAAAGGGTGAAGCAGGT
R:
GTTCGCCGTCGTCACCTTT
Band lengths:
133-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]