MmuEX6099917 @ mm10
Exon Skipping
Gene
ENSMUSG00000026837 | Col5a1
Description
collagen, type V, alpha 1 [Source:MGI Symbol;Acc:MGI:88457]
Coordinates
chr2:28013460-28014423:+
Coord C1 exon
chr2:28013460-28013567
Coord A exon
chr2:28014107-28014160
Coord C2 exon
chr2:28014370-28014423
Length
54 bp
Sequences
Splice sites
3' ss Seq
GCTTACCTCTCTCTTCTCAGGGC
3' ss Score
11
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
Exon sequences
Seq C1 exon
GGACCTAAAGGAGAAAGAGGGGAGAAGGGAGAGGCTGGCCCCTCTGGTGCTGCTGGACCCCCTGGACCCAAAGGCCCTCCTGGAGATGATGGCCCCAAAGGCAGCCCT
Seq A exon
GGCCCTGTGGGCTTTCCTGGAGATCCTGGTCCCCCTGGAGAGCCAGGCCCCGCA
Seq C2 exon
GGTCAAGACGGCCCACCTGGTGACAAAGGGGACGATGGTGAACCTGGGCAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026837-'63-73,'63-68,72-73=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGAGGGGAGAAGGGAGAGG
R:
CATCGTCCCCTTTGTCACCAG
Band lengths:
132-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types