GgaEX1020884 @ galGal4
Exon Skipping
Gene
ENSGALG00000012156 | DPP10
Description
dipeptidyl-peptidase 10 (non-functional) [Source:HGNC Symbol;Acc:HGNC:20823]
Coordinates
chr7:28827628-28874290:-
Coord C1 exon
chr7:28874219-28874290
Coord A exon
chr7:28834906-28835020
Coord C2 exon
chr7:28827628-28827723
Length
115 bp
Sequences
Splice sites
3' ss Seq
TTTTTATTCTTTTCCTTTAGGAA
3' ss Score
12.42
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
ATGACAGCGATGAAGGAGCAGCCGGCGCACCCGGGCGGCAGGGGGAACCCGCCGCCGCCTCAGCCCGACCAG
Seq A exon
GAACTTGGAAGTAACAGCCCTCCGCAGAGGAACTGGAAGGGAATTGCTATTGCTCTGCTGGTGATTCTAGTTGTTTGCTCGCTCATCACTATGTCTGTCATTCTTTTAACACCAG
Seq C2 exon
ATGAGCTTGCAAATTCTTCTGAAACCAGATTGTCCTTGGAAGATCTCTTCAGAAAAGAGTTCATAGTTCATAATCCAGAAGCCAAATGGATTAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012156_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.205 C2=0.000
Domain overlap (PFAM):
C1:
PF059157=DUF872=PU(8.8=20.8)
A:
PF059157=DUF872=FE(66.7=100)
C2:
PF059157=DUF872=PD(21.1=36.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACAGCGATGAAGGAGCAG
R:
TCCATTTGGCTTCTGGATTATGA
Band lengths:
162-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]