DreEX0028205 @ danRer10
Exon Skipping
Gene
ENSDARG00000076826 | dpp6a
Description
dipeptidyl-peptidase 6a [Source:ZFIN;Acc:ZDB-GENE-090918-4]
Coordinates
chr24:6781221-6868565:-
Coord C1 exon
chr24:6868058-6868565
Coord A exon
chr24:6795259-6795373
Coord C2 exon
chr24:6781221-6781319
Length
115 bp
Sequences
Splice sites
3' ss Seq
TTGTCCATGTCTTTCTGTAGGAG
3' ss Score
9.13
5' ss Seq
CAGGTACGC
5' ss Score
10.12
Exon sequences
Seq C1 exon
TGAACAGGAAAACACACGTATACTCACCTCACACATTTTAATGTTCTCGCTTCAGGCAGAAGGTGAAAAGGCGGCATTCGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGTTTGTGTGCGCGCGAGCAATCGCTGCACAGAGGCGGGGGTGAAAAAGGCGGCAAGCGCGTGAAGGGGGAAGAGAAAAGCTCGTGTGCGCTCGCAGAAGACCGGTGTCTGTATCCAGGCTGTGAACGGTTTTCTCCGTGTCCGTTTTCCTCCGCTCCTCTCTCTCTTTCTCTCAGTTATTTGGCTACAGAGGCGTACATATCATCCGAAGGACTCTCTGGGATTTTGCTGCATTTCTGCCGTTTTCCCCTCAGCATCTTCTCTCATCTTTGTAACCGTCAGCAGTCTCACCACAAACTGAATGTCTCTTGCTGTCTGTGGTAATTTGTTATCATGACCACTGCAAAGGAGTCAAATATATCGACCAAAACAGCTCAACAGCAAGAACAG
Seq A exon
GAGCTGGTGGGAAGTAACCCTCCGCAGAGGAACTGGAAGGGAATAGCGATCGCACTGCTTGTTATTCTGGTCATCTGCTCTCTGATCGTCACCTCTGTCATTCTGCTGACTCCAG
Seq C2 exon
GTGAGGATGATAGCCTGGCCTTTAAGGAAAAAGTGACAGTGGAAGAAATCTTCAAGAAAGACTTCAAAGTTCACGACCCCAACGCTAAGTGGATCAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076826_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.154 C2=0.000
Domain overlap (PFAM):
C1:
PF059157=DUF872=PU(26.2=89.5)
A:
PF059157=DUF872=FE(58.5=100)
C2:
PF059157=DUF872=PD(12.3=23.5)
Main Skipping Isoform:
ENSDART00000080766fB2396
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCTGCCGTTTTCCCCTCAG
R:
CTGATCCACTTAGCGTTGGGG
Band lengths:
254-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]