GgaEX1020910 @ galGal4
Exon Skipping
Gene
ENSGALG00000006314 | DPP6
Description
dipeptidyl-peptidase 6 [Source:HGNC Symbol;Acc:HGNC:3010]
Coordinates
chr2:7411564-7487943:+
Coord C1 exon
chr2:7411564-7411620
Coord A exon
chr2:7481877-7481991
Coord C2 exon
chr2:7487845-7487943
Length
115 bp
Sequences
Splice sites
3' ss Seq
CTTTCCTTTAATATTTCTAGGAG
3' ss Score
8.84
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
ATGACTACAGCCAAGGAGCAAAATGCATCAGGGAAACAAGCCCAGCAGCAGGATCAG
Seq A exon
GAGCTGGTGGGGAGTAATCCTCCACAAAGAAACTGGAAAGGAATTGCAATTGCCTTACTTGTTATTCTCGTTATCTGCTCCCTGATTGTCACCTCTGTTATACTTCTGACACCAG
Seq C2 exon
TTGAAGATAACAGCTTGTCTCAGAAGAAGAAGATAACAGTGGAAGATCTCTTCAGTGCTGATTTCAAAATTCATGACCCAGAGGCTAAATGGATAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006314_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.154 C2=0.000
Domain overlap (PFAM):
C1:
PF059157=DUF872=PU(22.9=84.2)
A:
PF059157=DUF872=FE(54.3=100)
C2:
PF059157=DUF872=PD(20.0=41.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTACAGCCAAGGAGCAAA
R:
CAGTTATCCATTTAGCCTCTGGGT
Band lengths:
155-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]